{ "_id": "6a153748acfb0bcc41d4fa5b", "Package": "pepr", "Type": "Package", "Title": "Reading Portable Encapsulated Projects", "Version": "0.6.0", "Date": "2026-02-27", "Authors@R": "c(person(\"Nathan\", \"Sheffield\", email = \"nathan@code.databio.org\",\nrole = c(\"aut\", \"cph\",\"cre\")),person(\"Michal\",\"Stolarczyk\",email=\"michal@virginia.edu\",role=c(\"aut\")))", "Maintainer": "Nathan Sheffield ", "Description": "A PEP, or Portable Encapsulated Project, is a dataset that\nsubscribes to the PEP structure for organizing metadata. It is\nwritten using a simple YAML + CSV format, it is your one-stop\nsolution to metadata management across data analysis\nenvironments. This package reads this standardized project\nconfiguration structure into R. Described in Sheffield et al.\n(2021) .", "VignetteBuilder": "knitr", "License": "BSD_2_clause + file LICENSE", "BugReports": "https://github.com/pepkit/pepr/issues", "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "Config/pak/sysreqs": "make libicu-dev libssl-dev", "Repository": "https://pepkit.r-universe.dev", "Date/Publication": "2026-02-28 02:36:54 UTC", "RemoteUrl": "https://github.com/pepkit/pepr", "RemoteRef": "HEAD", "RemoteSha": "458a8c8ad8053b1c58f50ab44d6744e7aa6d1984", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-26 05:58:50 UTC", "User": "root" }, "Author": "Nathan Sheffield [aut, cph, cre],\nMichal Stolarczyk [aut]", "MD5sum": "c650010f0d9b4587efffc56873e536ff", "_user": "pepkit", "_type": "src", "_file": "pepr_0.6.0.tar.gz", "_fileid": "7f4695426499497fdf9e9b1688ce8605df8197f317690f65999e9085d6e7461f", "_filesize": 186418, "_sha256": "7f4695426499497fdf9e9b1688ce8605df8197f317690f65999e9085d6e7461f", "_created": "2026-05-26T05:58:50.000Z", "_published": 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"title": "Extract subsamples", "topics": [ "getSubsample", "getSubsample,Project,character,character-method" ] }, { "page": "listAmendments", "title": "List amendments", "topics": [ "listAmendments", "listAmendments,Project-method" ] }, { "page": "makeSectionsAbsolute", "title": "Make selected sections absolute using config path", "topics": [ "makeSectionsAbsolute", "makeSectionsAbsolute,Config,character,character-method" ] }, { "page": "pepr", "title": "pepr", "topics": [ "pepr-package", "pepr" ] }, { "page": "Project", "title": "The constructor of a class representing a Portable Encapsulated Project", "topics": [ "Project" ] }, { "page": "Project-class", "title": "Portable Encapsulated Project object", "topics": [ "Project-class" ] }, { "page": "pullProject", "title": "Pull a PEP from PEPhub API", "topics": [ "pullProject" ] }, { "page": "sampleTable", "title": "View samples in the objects of '\"Project\"'", "topics": [ "sampleTable", "sampleTable,Project-method" ] }, { "page": "saveJWT", "title": "Save or update JWT", "topics": [ "saveJWT" ] }, { "page": "saveProject", "title": "Save a modified PEP Project to a local directory", "topics": [ "saveProject" ] }, { "page": "select-config", "title": "Access '\"Config\"' object elements", "topics": [ "$,Config-method", "select-config", "[,Config-method", "[[,Config-method" ] } ], "_readme": "https://github.com/pepkit/pepr/raw/HEAD/README.md", "_rundeps": [ "askpass", "bitops", "cli", "curl", "data.table", "glue", "httr2", "lifecycle", "magrittr", "openssl", "R6", "rappdirs", "RCurl", "rlang", "stringi", "stringr", "sys", "vctrs", "withr", "yaml" ], "_vignettes": [ { "source": "feature6_amendments.Rmd", "filename": "feature6_amendments.html", "title": "Amendments in pepr", "author": "Michal Stolarczyk", "engine": "knitr::rmarkdown", "headings": [ "Learn amendments in pepr", "Problem/Goal", "Solution", "Code" ], "created": "2020-05-26 15:39:34", "modified": "2026-02-28 02:36:54", "commits": 3 }, { "source": 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