Package: pepr 0.5.0

Nathan Sheffield

pepr: Reading Portable Encapsulated Projects

A PEP, or Portable Encapsulated Project, is a dataset that subscribes to the PEP structure for organizing metadata. It is written using a simple YAML + CSV format, it is your one-stop solution to metadata management across data analysis environments. This package reads this standardized project configuration structure into R. Described in Sheffield et al. (2021) <doi:10.1093/gigascience/giab077>.

Authors:Nathan Sheffield [aut, cph, cre], Michal Stolarczyk [aut]

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pepr.pdf |pepr.html✨
pepr/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/pepkit/pepr/issues

On CRAN:

bioinformaticsmetadata

19 exports 4 stars 1.53 score 19 dependencies 1 mentions 19 scripts 241 downloads

Last updated 10 months agofrom:150b52dcce. Checks:OK: 7. Indexed: yes.

Exports:.checkSection.expandList.expandPath.getSubscript.listifyDF.makeAbsPath.printNestedList.strformatactivateAmendmentscheckSectionconfigConfigfetchSamplesgetSamplegetSubsamplelistAmendmentsmakeSectionsAbsoluteProjectsampleTable

Dependencies:bitopsclicodetoolscpp11crayondata.tablegluelifecyclelobstrmagrittrprettyunitspryrRcppRCurlrlangstringistringrvctrsyaml